BioDataFuse

Details

Code

github.com/BioDataFuse/pyBiodatafuse

Usage

• 14 GitHub forks
• 15 GitHub stars
• 50 PyPI downloads, last month

Described in

• Extended RDF support for Biomedical Knowledge Graphs in pyBioDataFuse: on-the-fly RDF graph generation and new resource annotatorsJavier Millán Acosta, Egon L Willighagen, Yojana Gadiya, Tooba Abbassi-DaloiiCEUR Workshop Proceedings (SWAT4HCLS 2025) · 2025 · Conference paper · 10.24406/publica-8969
• pyBiodatafuse: extending interoperability of data using modular queries across biomedical resourcesYojana Gadiya, Javier Millán Acosta, Ammar Ammar, Alejandro Adriaque Lozano, Delano Wetstede, Dominik Martinat, Ana Claudia Sima, Hailiang Mei, Egon L Willighagen, Tooba Abbassi-DaloiiBioinformatics · 2026 · Journal article · 10.1093/bioinformatics/btag064

Contributors

• Alejandro Adriaque Lozano
• Ammar Ammar
• Ana Claudia Sima
• Charles Tapley Hoyt
• Denise N Slenter
• djwetstede
• Dominik Martinat
• Egon L Willighagen
• Hasan Balcı
• Javier Millán AcostaImplemented RDF graph generation, AOP-Wiki and WikiPathways integrations, and GraphDB support; developed the corresponding API and Vue interface in biodatafuseUI; code maintenance.
• Tooba Abbassi-Daloii
• Yojana Gadiya
• Youp Hendriks