My events

ELIXIR CZ–NL Staff Exchange, Brno, Czech Republic

event · visiting researcher · Aug 2026

Visited RECETOX, Masaryk University, to bridge computational toxicology and metabolomics: AOP-framework technologies, RDF schema, ontology and identifier alignment, and molecular pathways in untargeted metabolomics. · ELIXIR Staff Exchange grant, funded by ELIXIR
Virtual Human Platform launch, Utrecht, Netherlands

event · demo · May 2026

Showcased the AOP-Suite at the official launch of the VHP4Safety Virtual Human Platform.

ELIXIR BioHackathon Europe, Berlin, Germany

hackathon · co-lead · Nov 2025

shape-driven knowledge graph integration: a registry of RDF dataset schemas built with rdfsolve (Health-RI news). · Participation as project co-lead funded by ELIXIR
DBCLS BioHackathon, Mie, Japan

hackathon · Sep 2025

Developed RDF schema tooling in rdfsolve.” · Personally invited; participation funded by Database Center for Life Science (DBCLS)MCP server tools with RDF shapesJ.E. Labra-Gayo, Y. Yamamoto, A.R. Kinjo, A. Waagmeester, J. Millán Acosta, S. Kawashima, Y. Okabeppu, J. Koblitz, S.B. Larriet2025 · Preprint · 10.37044/osf.io/8qeh5_v1
SWAT4HCLS, Barcelona, Spain

conference · poster · Feb 2025

On-the-fly RDF graph generation and new resource annotators in pyBioDataFuse, with a paper in CEUR Workshop Proceedings.Extended RDF support for Biomedical Knowledge Graphs in pyBioDataFuse: on-the-fly RDF graph generation and new resource annotatorsJ. Millán Acosta, E. Willighagen, Y. Gadiya, T. Abbassi-DaloiiCEUR Workshop Proceedings (SWAT4HCLS 2025) · 2025 · Conference paper · 10.24406/publica-8969

ELIXIR BioHackathon Europe, Barcelona, Spain

hackathon · Nov 2024

Worked on pyBioDataFuse and was first author of the report on graph-schema discovery and transformation for database integration, the starting point for rdfsolve. · Invited; participation funded by ELIXIRBioHackEU24 report: Expanding FAIR database integration through elucidation and transformation of underlying graph schemasJ. Millán Acosta, S. Kawashima, T. Katayama, J. Bolleman, D. Martinat, H. Detering, J.E.L. Gayo, Y. Gadiya, T. Abbassi-Daloii2025 · Preprint · 10.37044/osf.io/ptmg5_v1
ELIXIR Toxicology Community Workshop, Utrecht, Netherlands

workshop · May 2024

Co-authored the workshop report on FAIRification of toxicological research output.INTOXICOM Workshop Report: FAIRification of Toxicological Research Output: Leveraging ELIXIR ResourcesM. Martens, I. Lynch, T. Exner … J. Millán Acosta … E. Willighagen2024 · Preprint · 10.37044/osf.io/un2rw
Ontologies for Advanced Materials (Joint workshop of the ELIXIR Tox Community / PINK project), Brussels, Belgium

workshop · talk · Feb 2024

“eNanoMapper Ontology: Updated curation and development workflows,” on harmonizing materials and biological ontologies for safe-and-sustainable-by-design data.

Ontologies4Chem Workshop, online

workshop · talk · Oct 2023

The eNanoMapper ontology’s restructured curation, testing, and build workflows, and upcoming CHEMINF updates. · video · 10.5281/zenodo.10218107
NUTRIM Division I Symposium, Maastricht, Netherlands

conference · pitch · Sep 2023

“Linked data is meaningful knowledge.” · 10.5281/zenodo.8398319
NanoSolveIT Conference, Athens, Greece

conference · poster · Aug 2023

“Evolving the eNanoMapper Ontology,” on enhancements to the ontology for nanoinformatics data management.
ByteMAL, Aachen, Germany

conference · poster · May 2023

The eNanoMapper ontology v9.0 and its move to automated, GitHub Actions-based builds. · 10.5281/zenodo.8032202
BioSB, Egmond aan Zee, Netherlands

conference · poster · May 2023

The eNanoMapper ontology v9.0 and its move to automated, GitHub Actions-based builds. · 10.5281/zenodo.8032202